Get More from Microsoft Intune with the NinjaOne Integration

Many IT teams rely on Microsoft Intune as the backbone of their identity, provisioning, and compliance strategy. Intune defines governance and ensures every device begins its lifecycle in a secure, policy-driven state. But as environments grow more distributed and workloads expand, teams often need deeper operational control, real-time action, and unified visibility across all devices, not just those enrolled through Intune.
This is where the NinjaOne + Intune integration delivers value.
NinjaOne complements Intune by extending day-to-day endpoint operations, without disrupting existing architecture. Together, they create a unified, identity-first ecosystem that gives IT teams full visibility, consistent policy enforcement, and powerful automation across every device.
Creating a stronger management stack
Intune provides governance. NinjaOne powers operations. Together, they create a complete, modern endpoint management lifecycle with real-time visibility and action.
With the NinjaOne + Intune integration, IT teams can manage the entire device fleet in one place, while keeping Intune at the heart of identity and enrollment. This unified approach eliminates tool switching, strengthens compliance, reduces manual effort, and helps technicians support users faster.
What the integration delivers
Intune remains the source of identity. NinjaOne plugs into the organization’s existing identity and enrollment architecture, enhancing it without disrupting what’s already working. Together they deliver:
Unified visibility across all devices
- Intune remains the source of identity, policies, and provisioning, and NinjaOne ingests Intune-managed devices, presenting them alongside fully managed NinjaOne endpoints for a single source of truth.
- SCIM-based user-to-device mapping improves audit readiness, simplifies offboarding, and enhances asset accuracy.
- Device lifecycle insights, including operational data, software, warranty information, and unmanaged assets, close critical visibility gaps.
Complete connectivity across management solutions
- With the NinjaOne platform, IT teams can manage workstations, servers, mobile devices, and cloud-managed devices together—even those Intune doesn’t natively support.
- NinjaOne Remote Access accelerates troubleshooting and reduces MTTR with one-click remote access from any Intune device record.
- Extend NinjaOne’s real-time management and automation to Intune-managed devices for consistent, proactive IT operations. Easily toggle devices from Intune-discovered to fully NinjaOne-managed when deeper control is needed. No need to re-enroll the device or disrupt workflows.
- Maintain access to Intune Autopilot and Conditional Access capabilities while gaining NinjaOne’s operational depth.
Improved compliance and stronger security posture
- Ensure consistent policy enforcement across all devices, whether they are Intune-managed or not.
- Accelerate vulnerability remediation with NinjaOne’s real-time automation, patching, and remediation workflows.
- Unified reporting gives teams a single, reliable view of device health, compliance, and operational risk.
- As Microsoft expands Conditional Access with richer device health requirements, NinjaOne’s real-time telemetry is positioned to enhance those signals and strengthen your overall security posture.
Complete device lifecycle management
On their own, Intune and NinjaOne each manage different phases of the endpoint lifecycle:
- Intune manages identity, provisioning, compliance, and governance.
- NinjaOne manages operations, automation, patching, remediation, remote support, and full device lifecycle oversight.
Together, they deliver a seamless, end-to-end workflow with fewer blind spots and fewer tools to manage.
Real-Time support when it matters most
Modern support requires speed. When issues arise, technicians need to act immediately, without switching between consoles or losing context.
With one-click access to NinjaOne Remote directly from Intune, IT teams can troubleshoot instantly, resolve issues before users are impacted, and maintain a secure, workflow between governance and action.
Built for the way IT works
Today’s IT teams must manage:
- Hybrid fleets across multiple OS types
- Evolving security and compliance expectations
- Technician overload and fragmented tooling
- Rising demand for automation and faster response times
The NinjaOne + Intune integration simplifies daily operations by consolidating visibility, reducing context switching, and enabling real-time action across all devices using the tools technicians are already familiar with. It’s a practical, scalable way to bring together identity, governance, and endpoint operations under one unified experience.
The bottom line
IT teams relying solely on Microsoft Intune are missing the operational layer needed to fully manage, support, and secure their fleets at scale.
Together, NinjaOne + Intune enable techs to:
- Manage every workstation, server, and mobile device in one place
- Unify identity, provisioning, operations, and automation
- Improve compliance and security posture with consistent enforcement
- Reduce friction for technicians and users
- Support users faster with real-time action
- Standardize operations and scale efficiently
The NinjaOne + Intune integration delivers an endpoint management experience built for the real world: Unified. Efficient. Identity-first. Ready to scale.
About NinjaOne
The cloud-native NinjaOne endpoint management platform delivers visibility, security, and control over all the endpoints for more than 30,000 customers in 130+ countries. It’s proven to increase productivity, reduce security risk, and lower costs.
We're obsessed with customer success and provide free and unlimited onboarding, training, and support.